MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Escherichia coli
19428wD4_HM13
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 110
bases: 5,033,648 bps
CDS: 4,645
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 79
misc RNA:
Total features: 4,735
Total number of protein coding genes annotated/found:
4,645
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Items 1 - 20
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Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range
Gene Product Name
SEQF5033|JADGMH010000001.1
SEQF5033_01604
Genome Viewer
NA
AA
1026/342
516941-517966
hypothetical protein
SEQF5033|JADGMH010000001.1
SEQF5033_01603
Genome Viewer
NA
AA
870/290
515742-516611
Succinate--CoA ligase [ADP-forming] subunit alpha
SEQF5033|JADGMH010000001.1
SEQF5033_01602
Genome Viewer
NA
AA
1167/389
514576-515742
Succinate--CoA ligase [ADP-forming] subunit beta
SEQF5033|JADGMH010000001.1
SEQF5033_01601
Genome Viewer
NA
AA
1218/406
513097-514314
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
SEQF5033|JADGMH010000001.1
SEQF5033_01600
Genome Viewer
NA
AA
2802/934
510281-513082
2-oxoglutarate dehydrogenase E1 component
SEQF5033|JADGMH010000001.1
SEQF5033_01599
Genome Viewer
NA
AA
717/239
509108-509824
Succinate dehydrogenase iron-sulfur subunit
SEQF5033|JADGMH010000001.1
SEQF5033_01598
Genome Viewer
NA
AA
1767/589
507326-509092
Succinate dehydrogenase flavoprotein subunit
SEQF5033|JADGMH010000001.1
SEQF5033_01597
Genome Viewer
NA
AA
348/116
506979-507326
Succinate dehydrogenase hydrophobic membrane anchor subunit
SEQF5033|JADGMH010000001.1
SEQF5033_01596
Genome Viewer
NA
AA
405/135
506581-506985
Succinate dehydrogenase cytochrome b556 subunit
SEQF5033|JADGMH010000001.1
SEQF5033_01595
Genome Viewer
NA
AA
108/36
506200-506093
Protein YbgU
SEQF5033|JADGMH010000001.1
SEQF5033_01594
Genome Viewer
NA
AA
1284/428
505887-504604
Citrate synthase
SEQF5033|JADGMH010000001.1
SEQF5033_01593
Genome Viewer
NA
AA
375/125
504458-504084
hypothetical protein
SEQF5033|JADGMH010000001.1
SEQF5033_01592
Genome Viewer
NA
AA
1047/349
503932-502886
hypothetical protein
SEQF5033|JADGMH010000001.1
SEQF5033_01591
Genome Viewer
NA
AA
792/264
502098-502889
Endonuclease 8
SEQF5033|JADGMH010000001.1
SEQF5033_01590
Genome Viewer
NA
AA
735/245
501328-502062
5-oxoprolinase subunit A
SEQF5033|JADGMH010000001.1
SEQF5033_01589
Genome Viewer
NA
AA
933/311
500406-501338
5-oxoprolinase subunit C
SEQF5033|JADGMH010000001.1
SEQF5033_01588
Genome Viewer
NA
AA
657/219
499756-500412
5-oxoprolinase subunit B
SEQF5033|JADGMH010000001.1
SEQF5033_01587
Genome Viewer
NA
AA
744/248
498990-499733
GTP cyclohydrolase 1 type 2
SEQF5033|JADGMH010000001.1
SEQF5033_01586
Genome Viewer
NA
AA
1482/494
498719-497238
Dipeptide permease D
SEQF5033|JADGMH010000001.1
SEQF5033_01585
Genome Viewer
NA
AA
1419/473
495778-497196
Deoxyribodipyrimidine photo-lyase
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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